PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007112-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 557aa    MW: 61098.2 Da    PI: 7.4988
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007112-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.46.3e-352193191106
                    TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 
                            a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak +i+el  +++ ++++++++s  + +      
  SMil_00007112-RA_Salv 219 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDELDHLPAWHPTATTPSSAAQDTP----- 301
                            589**************************************************************666664443333333333..... PP

                    TCP  89 kaaksaakskksqksaas 106
                            +++++ ++ ++++++ +s
  SMil_00007112-RA_Salv 302 ASSTKPMPAQNPNSQISS 319
                            233333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-31220341IPR005333Transcription factor, TCP
PROSITE profilePS5136932.746222280IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MKKEKGGKSW KPPNGMGQSG IELYKNSSSS SVDITEIFNL LSDPNTATLI TAIQPSYSRE  60
RERERAVYFP HFSPQASLEF VVLTVLLQIF LYSTELEEGN HKALSLDPQR NHHLHLYQNQ  120
NQDQNQENQN YVAEQSPNVQ FHQLFHQNQL LYGANRLDSE NPAPPPRPPQ VKKRAPPEAG  180
GEHARLREKM GESSQQQRIG ARATVGEVVE VQGGHIVRAT GRKDRHSKVC TAKGPRDRRV  240
RLAAHTAIQF YDVQDRLGYD RPSKAVDWLI KKAKSSIDEL DHLPAWHPTA TTPSSAAQDT  300
PASSTKPMPA QNPNSQISSF LPPSLDSDVI ADTIKSFFPV TGEASSSAMQ FHSFTSSDMI  360
SRSSSHTQDL RLSLQSLQDP ILHAQAAAPP RQVLLSGTPL GFDGGWLDHH QQAAELSRLQ  420
RFADAPAGYF FNPPPPPPPQ PLLQQLLGHN QMVSQRGPLQ SSNTPSVRAW IDAPAADHQP  480
FYPSSFSGIG FASGYGGFPG FHIPARIQGH ESLIEFMLVG SGGEASEQSA VSIVVHHLLG  540
ILKSRSPRDG EGGGLNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00062PBMTransfer from AT3G15030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688635e-83AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818315e-83FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098249.11e-137PREDICTED: transcription factor TCP4
RefseqXP_011098250.11e-137PREDICTED: transcription factor TCP4
RefseqXP_011098251.11e-137PREDICTED: transcription factor TCP4
SwissprotQ8LPR55e-85TCP4_ARATH; Transcription factor TCP4
TrEMBLQ6XX201e-115Q6XX20_ANTMA; Mutant cincinnata
STRINGPGSC0003DMT4000322681e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-73TCP family protein